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Automate Your Shopify Store with Amazon MCF | Shopify Order Integration with Amazon FBA via Apps

Amazon is one of the biggest retail giants on the planet. As the number of buyers and sellers is rising, this eCommerce giant is clearly showing no signs of Slowing down. To dominate more, Amazon offers MCF (Multi-channel fulfillment) to fulfill orders in different marketplaces like eBay, Overstock, Target, and more. 

Amazon also allows sellers to connect their websites as well. That means you can ship your item through Amazon MCF service for your website. 

If you run a successful Shopify store and don’t want to take the hassle of order fulfillment then Amazon MCF might be the best solution for you. To fulfill your Shopify order via Amazon MCF service, you need to integrate your Shopify store with Amazon.

In this article, we will go through the details about Amazon MCF service, the benefits of Shopify Amazon Integration, and the Best Shopify apps to integrate with Amazon. We also guide you on how to integrate the apps between Shopify and Amazon to fulfill your Shopify orders.

So keep reading till the end.

What is Amazon MCF?

Amazon Multi-Channel Fulfillment is a fulfillment service that makes use of Amazon’s warehouses to keep items and handle order fulfillment for both Amazon and the Brand’s websites. We can say, it is a subset of the Amazon FBA (Fulfillment by Amazon) service.

With MCF, you will get access to Amazon’s top-notch fulfillment network. When your website or Shopify items inventory is at an Amazon fulfillment center, MCF takes care of picking, packing, and shipping of orders placed on sales channels other than Amazon directly to customers.

By using MCF, no matter the carrier, you will receive tracking information for your orders, which are fully trackable with real-time updates for deliveries. Alternatively, you can also decide to have your customer’s returns sent back to an Amazon fulfillment facility so they can be added to your stock.

How do Sellers Benefit from Shopify Amazon Integration?

Apart from Shopify’s in-house uses, sellers will be benefited from the following things from Amazon Shopify Integration.

  1. It provides sellers with a sizeable window to increase revenues. Due to its huge number of visitors, Amazon algorithms help you generate organic traffic, and Shopify’s user-friendly interface makes it possible for you to sell products swiftly.
  2. This multichannel selling enables you to understand what and where exactly your potential shoppers exist.
  3. You can link your Shopify products with Amazon’s listings for any category.
  4. synchronize your Shopify product details, images, and other variants to your Amazon’s seller central account.
  5. Make the best use of Shopify reports to reconcile Amazon sales.
  6. Amazon offers affiliate marketing programs on its platform. It means affiliates market the retailers’ products for a specific commission.
  7. Fast and on-time delivery with a flat rate or competitive price

Shopify Apps to Integrate with Amazon:

When it comes to integration between Amazon and Shopify, you might be wondering! How to connect if there isn’t any option to do so? As there was a war between Amazon and Shopify a few months ago and they closed down order automation or multi-channel fulfillment.

However, for you as a retailer, it’s crucial to know if you can perform Shopify Amazon integration even if there’s no option in Shopify.

The answer is Yes.

There are a lot of handful third-party apps in the Shopify store that can help you realize Shopify-Amazon integration like Joelister, Amazon Importer Spreadr App, Zonify-Amazon Dropshipping, Amazon FBA / MCF Shipping, Amazon MCF by WebBee, Amazon FBA shipping, and more.

Out of all the apps, we are going to talk about 2 apps that are recommended by Amazon: Amazon MCF by WebBee and Amazon FBA shipping by Bytestand

Both are very similar in features like automatically tracking and fulfilling orders via FBA, switching FBA accounts during checkout, Notifying customers and closing orders, etc. but the key difference is the pricing plan.

WebBee’s pricing plan is based on the number of orders, so if you’re having up to 50 orders per month, you’re on the starter plan. For up to 1000 orders per month, there is the basic plan, and for unlimited orders, there is the advanced plan.

Whereas Bytestand keeps it simple with their pricing plan. It’s just a flat $25 per month and that is for unlimited orders and $20 for each additional marketplace.

How to Integrate the Apps between Shopify and Amazon

As the WebBee app is the most popular and suggested by Amazon for multi-channel fulfillment, we are going to show you how the process of integration works. Basically, the process is the same to integrate all the Shopify Apps with Amazon

So let’s move on to the process…..

  • 3 mandatory Shopify settings to Configure before using Amazon MCF app by WebBee

Step 1: Deactivate Fulfillment by Amazon integration from your Shopify store. To deactivate, open your Shopify store, further go to

Settings > Shipping and Delivery > Scroll down to Fulfillment by Amazon > Deactivate. 

In case, this application is not installed, please move to Step 2.

Scroll down to Accounts and integrations, and click on Manage Integrations.

Step 2: Choose Shopify under the Inventory managed by setting and go to the Product page

Scroll down to the Inventory section, select Shopify under the Inventory Managed by drop-down menu, and further hit the Save button.

Step 3: From your Shopify admin, go to Settings > Checkout and accounts.

Scroll down to the Order processing section, and under the After an order has been paid setting, select Automatically fulfill only the gift cards of the order, further hit the Save button.

  • How to add the Amazon MCF app by WebBee to your Shopify store?

Step 1: Go to this and click on the Add app button

Step 2: Click on the Install app button.

After that, it’ll show you. Congratulations, you have successfully added the Amazon MCF app by WebBee to your Shopify store.

  • Onboarding Overview | Shopify: Auto Multi-Channel fulfillment app

Step 1: As soon as you install the application inside your Shopify store, further it opens by itself. You will see an overview of some of its features. Once you have reviewed it, just click on the Next button. Below is a screenshot to help you understand this visually.

Step 2: Select your preferred Amazon FBA marketplace and further click on the Connect button. Now, you will be redirected to your Amazon Seller Central account, so you can take your MWS credentials.

Step 3: If your entered credentials are correct, you will see that the button will turn to (Authenticated / Connected). Now click on the Next button, to review some of the App Settings. You can either configure them right now OR at a later stage. But, it would be good to configure some of them, and further save the changes from the Save button. Once done, click on the Next button.

Step 4: Once, you have configured some of the App settings, you will be asked to review, further turn ON the toggles that you are interested in, and then click on the Next button

Step 5: Now, you will be landing on the Plans page. This is the last step of onboarding. Here you can either enter one of your coupon codes to get the benefits OR choose a plan that suits your needs, although it is not mandatory to choose a plan at this stage. Once done, just click on the Next button.

After that it’ll show you, Congratulations, you have successfully completed the onboarding of the Amazon MCF app.

Please note: You need to Make sure that you have configured these 3 mandatory Shopify settings before using our Auto Multi-Channel fulfillment app.

So, this is how you can integrate WebBee Apps for Amazon MCF.

Final Thoughts,

The new era of eCommerce has made becoming a global entrepreneur easier than ever before. There are so many options in terms of platforms, inventory fulfillment, and shipping. 

If you run a successful Shopify store and handle everything from managing inventory to fulfillment by yourself, it might be tempting and hassle. 

For that, Amazon Shopify integration is one of the most excellent ways to handle your Shopify order Fulfillment via Amazon MCF. It not only fulfills your orders but also increases brand visibility and boosts sales. So adding Shopify to Amazon is an ideal way to get started

If you have any queries about Amazon MCF, Shopify Apps, or Apps integration, please let us know through the comment box or email us at the following email address 

To know more about Amazon or Shopify, please check out our other blog. Also, you can check our YouTube videos related to Amazon and Shopify.

How to Convert FBM to FBA and Send Products to Amazon Warehouse

How to Connect Your YouTube Channel to Shopify

Shopify Product Listing Guide

Listing on Shopify from Linnworks

Email Automation System

Amazon FBA Inventory Planning

Amazon FBA vs FBM vs Prime

Amazon FBA – A Complete Overview of the Amazon FBA Process

Amazon FBA Barcodes | How to Create Amazon FNSKU 

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